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    LOC105650954 E3 ubiquitin-protein ligase SINAT2 [ Jatropha curcas ]

    Gene ID: 105650954, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC105650954
    Gene description
    E3 ubiquitin-protein ligase SINAT2
    Locus tag
    JCGZ_19174
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Jatropha curcas
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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    Genomic context

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    See LOC105650954 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current RJC1_Hi-C (GCF_014843425.1) Unplaced Scaffold NW_023590906.1 (1071268..1075855, complement)
    101 previous assembly JatCur_1.0 (GCF_000696525.1) Unplaced Scaffold NW_012124109.1 (275039..279648)

    NW_023590906.1Genomic Context describing neighboring genes Neighboring gene 26S proteasome regulatory subunit RPN13 Neighboring gene GTP-binding protein BRASSINAZOLE INSENSITIVE PALE GREEN 2, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. Zhang L, et al. PLoS One, 2014. PMID 24837971, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase SINAT2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Jatropha curcas Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference RJC1_Hi-C Primary Assembly

    Genomic

    1. NW_023590906.1 Reference RJC1_Hi-C Primary Assembly

      Range
      1071268..1075855 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012237920.3 → XP_012093310.1  E3 ubiquitin-protein ligase SINAT2

      See identical proteins and their annotated locations for XP_012093310.1

      UniProtKB/TrEMBL
      A0A067L7D9
      Conserved Domains (2) summary
      cd00162
      Location:59 → 99
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
      pfam03145
      Location:102 → 300
      Sina; Seven in absentia protein family
    Nucleotide Protein
    Heading Accession and Version

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