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    APOBEC3D apolipoprotein B mRNA editing enzyme catalytic subunit 3D [ Colobus angolensis palliatus ]

    Gene ID: 105527769, updated on 19-Jun-2024

    Summary

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    Gene symbol
    APOBEC3D
    Gene description
    apolipoprotein B mRNA editing enzyme catalytic subunit 3D
    See related
    Ensembl:ENSCANG00000031957
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Colobus angolensis palliatus (sub-species: palliatus)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Colobus
    Orthologs
    human all
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    Genomic context

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    See APOBEC3D in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    100 current Cang.pa_1.0 (GCF_000951035.1) Unplaced Scaffold NW_012120154.1 (2375776..2386943, complement)

    NW_012120154.1Genomic Context describing neighboring genes Neighboring gene DNA dC->dU-editing enzyme APOBEC-3G-like Neighboring gene apolipoprotein B mRNA editing enzyme catalytic subunit 3F Neighboring gene DNA dC->dU-editing enzyme APOBEC-3C Neighboring gene uncharacterized LOC105527773 Neighboring gene DNA dC->dU-editing enzyme APOBEC-3A-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_012120154.1 Unplaced Scaffold Reference Cang.pa_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cytidine deaminase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA cytosine deamination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cytidine to uridine editing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in defense response to virus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of single stranded viral RNA replication via double stranded DNA intermediate IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in P-body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA dC->dU-editing enzyme APOBEC-3F-like
    Names
    DNA dC->dU-editing enzyme APOBEC-3D

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Colobus angolensis palliatus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cang.pa_1.0

    Genomic

    1. NW_012120154.1 Reference Cang.pa_1.0

      Range
      2375776..2386943 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011964205.1 → XP_011819595.1  DNA dC->dU-editing enzyme APOBEC-3F-like isoform X3

      Conserved Domains (3) summary
      cd01283
      Location:1 → 125
      cytidine_deaminase; Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on ...
      pfam05240
      Location:122 → 166
      APOBEC_C; APOBEC-like C-terminal domain
      pfam08210
      Location:9 → 179
      APOBEC_N; APOBEC-like N-terminal domain

    2. XM_011964204.1 → XP_011819594.1  DNA dC->dU-editing enzyme APOBEC-3F-like isoform X2

      UniProtKB/TrEMBL
      A0A2K5IJY0
      Related
      ENSCANP00000016986.1, ENSCANT00000039928.1
      Conserved Domains (3) summary
      cd01283
      Location:8 → 158
      cytidine_deaminase; Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on ...
      pfam05240
      Location:130 → 174
      APOBEC_C; APOBEC-like C-terminal domain
      pfam08210
      Location:201 → 371
      APOBEC_N; APOBEC-like N-terminal domain

    3. XM_011964203.1 → XP_011819593.1  DNA dC->dU-editing enzyme APOBEC-3F-like isoform X1

      UniProtKB/TrEMBL
      A0A2K5IJY0, A0A2K5IKK7
      Related
      ENSCANP00000016992.1, ENSCANT00000039934.1
      Conserved Domains (3) summary
      cd01283
      Location:213 → 338
      cytidine_deaminase; Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on ...
      pfam05240
      Location:151 → 195
      APOBEC_C; APOBEC-like C-terminal domain
      pfam08210
      Location:222 → 392
      APOBEC_N; APOBEC-like N-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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