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    APOBEC3B apolipoprotein B mRNA editing enzyme catalytic subunit 3B [ Mandrillus leucophaeus (drill) ]

    Gene ID: 105538864, updated on 19-Jun-2024

    Summary

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    Gene symbol
    APOBEC3B
    Gene description
    apolipoprotein B mRNA editing enzyme catalytic subunit 3B
    See related
    Ensembl:ENSMLEG00000004809
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mandrillus leucophaeus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Mandrillus
    Orthologs
    human all
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    Genomic context

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    See APOBEC3B in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    100 current Mleu.le_1.0 (GCF_000951045.1) Unplaced Scaffold NW_012102031.1 (4034459..4070813, complement)

    NW_012102031.1Genomic Context describing neighboring genes Neighboring gene DNA dC->dU-editing enzyme APOBEC-3C-like Neighboring gene apolipoprotein B mRNA editing enzyme catalytic subunit 3C Neighboring gene uncharacterized LOC105538865 Neighboring gene neuronal pentraxin receptor Neighboring gene dynein axonemal light chain 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_012102031.1 Unplaced Scaffold Reference Mleu.le_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cytidine deaminase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA cytosine deamination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cytidine to uridine editing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in defense response to virus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of single stranded viral RNA replication via double stranded DNA intermediate IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in P-body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA dC->dU-editing enzyme APOBEC-3B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Mandrillus leucophaeus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mleu.le_1.0

    Genomic

    1. NW_012102031.1 Reference Mleu.le_1.0

      Range
      4034459..4070813 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011978848.1 → XP_011834238.1  DNA dC->dU-editing enzyme APOBEC-3B isoform X3

      Conserved Domains (3) summary
      cd01283
      Location:28 → 123
      cytidine_deaminase; Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on ...
      pfam05240
      Location:137 → 182
      APOBEC_C; APOBEC-like C-terminal domain
      pfam08210
      Location:18 → 194
      APOBEC_N; APOBEC-like N-terminal domain

    2. XM_011978847.1 → XP_011834237.1  DNA dC->dU-editing enzyme APOBEC-3B isoform X2

      Conserved Domains (3) summary
      cd01283
      Location:8 → 158
      cytidine_deaminase; Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on ...
      pfam05240
      Location:292 → 337
      APOBEC_C; APOBEC-like C-terminal domain
      pfam08210
      Location:17 → 187
      APOBEC_N; APOBEC-like N-terminal domain

    3. XM_011978846.1 → XP_011834236.1  DNA dC->dU-editing enzyme APOBEC-3B isoform X1

      UniProtKB/TrEMBL
      A0A2K5XD19
      Related
      ENSMLEP00000001202.1, ENSMLET00000005318.1
      Conserved Domains (3) summary
      cd01283
      Location:8 → 158
      cytidine_deaminase; Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on ...
      pfam05240
      Location:317 → 362
      APOBEC_C; APOBEC-like C-terminal domain
      pfam08210
      Location:17 → 187
      APOBEC_N; APOBEC-like N-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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