U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    LOC101206774 5'-3' exoribonuclease 3 [ Cucumis sativus (cucumber) ]

    Gene ID: 101206774, updated on 14-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC101206774
    Gene description
    5'-3' exoribonuclease 3
    Locus tag
    Csa_008011
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucumis sativus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC101206774 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    102 current Cucumber_9930_V3 (GCF_000004075.3) 5 NC_026659.2 (20287438..20310084, complement)
    101 previous assembly ASM407v2 (GCF_000004075.2) 5 NC_026659.1 (16637826..16660616, complement)

    Chromosome 5 - NC_026659.2Genomic Context describing neighboring genes Neighboring gene chlorophyllase-1 Neighboring gene anaphase-promoting complex subunit 2 Neighboring gene phosphate transporter PHO1 homolog 3 Neighboring gene peptidyl-prolyl cis-trans isomerase NIMA-interacting 4

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 5'-3' RNA exonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in nuclear-transcribed mRNA catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    5'-3' exoribonuclease 3

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cucumber_9930_V3 Primary Assembly

    Genomic

    1. NC_026659.2 Reference Cucumber_9930_V3 Primary Assembly

      Range
      20287438..20310084 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031885384.1 → XP_031741244.1  5'-3' exoribonuclease 3 isoform X1

      UniProtKB/TrEMBL
      A0A0A0KNF5
      Conserved Domains (2) summary
      COG5049
      Location:1 → 848
      XRN1; 5'-3' exonuclease [Replication, recombination and repair]
      cl41729
      Location:915 → 1074
      KLF1_2_4_N; N-terminal domain of Kruppel-like factor (KLF) 1, KLF2, KLF4, and similar proteins

    2. XM_011656986.2 → XP_011655288.1  5'-3' exoribonuclease 3 isoform X1

      See identical proteins and their annotated locations for XP_011655288.1

      UniProtKB/TrEMBL
      A0A0A0KNF5
      Conserved Domains (2) summary
      COG5049
      Location:1 → 848
      XRN1; 5'-3' exonuclease [Replication, recombination and repair]
      cl41729
      Location:915 → 1074
      KLF1_2_4_N; N-terminal domain of Kruppel-like factor (KLF) 1, KLF2, KLF4, and similar proteins

    3. XM_004143733.3 → XP_004143781.1  5'-3' exoribonuclease 3 isoform X2

      Conserved Domains (3) summary
      COG5049
      Location:1 → 844
      XRN1; 5'-3' exonuclease [Replication, recombination and repair]
      pfam11029
      Location:1000 → 1091
      DAZAP2; DAZ associated protein 2 (DAZAP2)
      pfam15991
      Location:905 → 1068
      G_path_suppress; G-protein pathway suppressor
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases