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    LOC101216594 cytochrome P450 90A1 [ Cucumis sativus (cucumber) ]

    Gene ID: 101216594, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC101216594
    Gene description
    cytochrome P450 90A1
    Locus tag
    Csa_005865
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucumis sativus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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    Genomic context

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    See LOC101216594 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    102 current Cucumber_9930_V3 (GCF_000004075.3) 5 NC_026659.2 (5807182..5813752)
    101 previous assembly ASM407v2 (GCF_000004075.2) 5 NC_026659.1 (8965079..8970962)

    Chromosome 5 - NC_026659.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116403753 Neighboring gene uncharacterized LOC116404014 Neighboring gene nuclear pore complex protein NUP88 Neighboring gene uncharacterized LOC101213138 Neighboring gene GDSL esterase/lipase CPRD49

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables monooxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in brassinosteroid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in brassinosteroid homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sterol metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cytochrome P450 90A1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cucumber_9930_V3 Primary Assembly

    Genomic

    1. NC_026659.2 Reference Cucumber_9930_V3 Primary Assembly

      Range
      5807182..5813752
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011656685.2 → XP_011654987.1  cytochrome P450 90A1 isoform X2

      Conserved Domains (1) summary
      cl12078
      Location:26 → 476
      p450; Cytochrome P450

    2. XM_011656684.2 → XP_011654986.1  cytochrome P450 90A1 isoform X1

      See identical proteins and their annotated locations for XP_011654986.1

      UniProtKB/TrEMBL
      A0A0A0KP36
      Conserved Domains (1) summary
      cl12078
      Location:26 → 477
      p450; Cytochrome P450
    Nucleotide Protein
    Heading Accession and Version

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