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    LOC101308279 transcription factor DIVARICATA [ Fragaria vesca (wild strawberry) ]

    Gene ID: 101308279, updated on 11-Jan-2024

    Summary

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    Gene symbol
    LOC101308279
    Gene description
    transcription factor DIVARICATA
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Fragaria vesca
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
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    Genomic context

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    See LOC101308279 in Genome Data Viewer
    Location:
    chromosome: LG4
    Exon count:
    4
    Annotation release Status Assembly LG Location
    101 current FraVesHawaii_1.0 (GCF_000184155.1) LG4 NC_020494.1 (22431325..22436195)

    Linkage Group LG4 - NC_020494.1Genomic Context describing neighboring genes Neighboring gene reticulocalbin-2 Neighboring gene probable inactive serine/threonine-protein kinase scy1 Neighboring gene uncharacterized LOC101308568 Neighboring gene GEM-like protein 7

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_020494.1 Chromosome LG4 Reference FraVesHawaii_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor DIVARICATA

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Fragaria vesca Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference FraVesHawaii_1.0 Primary Assembly

    Genomic

    1. NC_020494.1 Reference FraVesHawaii_1.0 Primary Assembly

      Range
      22431325..22436195
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011465128.1 → XP_011463430.1  transcription factor DIVARICATA

      See identical proteins and their annotated locations for XP_011463430.1

      Conserved Domains (3) summary
      TIGR01557
      Location:114 → 166
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      smart00717
      Location:116 → 165
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      cd00167
      Location:12 → 58
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

    2. XM_004297667.2 → XP_004297715.1  transcription factor DIVARICATA

      See identical proteins and their annotated locations for XP_004297715.1

      Conserved Domains (3) summary
      TIGR01557
      Location:114 → 166
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      smart00717
      Location:116 → 165
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      cd00167
      Location:12 → 58
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

    3. XM_011465127.1 → XP_011463429.1  transcription factor DIVARICATA

      See identical proteins and their annotated locations for XP_011463429.1

      Conserved Domains (3) summary
      TIGR01557
      Location:114 → 166
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      smart00717
      Location:116 → 165
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      cd00167
      Location:12 → 58
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    Nucleotide Protein
    Heading Accession and Version

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