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    LOC105763009 L-galactose dehydrogenase [ Gossypium raimondii (Peruvian cotton) ]

    Gene ID: 105763009, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC105763009
    Gene description
    L-galactose dehydrogenase
    Locus tag
    B456_008G042900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gossypium raimondii
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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    Genomic context

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    See LOC105763009 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    101 current ASM2569854v1 (GCF_025698545.1) 12 NC_068576.1 (5774282..5776585, complement)
    100 previous assembly Graimondii2_0 (GCF_000327365.1) 8 NC_026936.1 (5706093..5708409, complement)

    Chromosome 12 - NC_068576.1Genomic Context describing neighboring genes Neighboring gene peptide methionine sulfoxide reductase B5 Neighboring gene soluble inorganic pyrophosphatase 6, chloroplastic Neighboring gene uncharacterized LOC105763011 Neighboring gene transfer RNA valine (anticodon AAC)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables L-galactose dehydrogenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in L-ascorbic acid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    L-galactose dehydrogenase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM2569854v1 Primary Assembly

    Genomic

    1. NC_068576.1 Reference ASM2569854v1 Primary Assembly

      Range
      5774282..5776585 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012581030.2 → XP_012436484.1  L-galactose dehydrogenase

      See identical proteins and their annotated locations for XP_012436484.1

      UniProtKB/TrEMBL
      A0A0D2PNJ2, A0A0D2TWW3
      Conserved Domains (2) summary
      PLN02587
      Location:8 → 321
      PLN02587; L-galactose dehydrogenase
      COG0667
      Location:7 → 311
      Tas; Predicted oxidoreductase (related to aryl-alcohol dehydrogenase) [General function prediction only]
    Nucleotide Protein
    Heading Accession and Version

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