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    LOC105796692 auxin-responsive protein IAA4 [ Gossypium raimondii (Peruvian cotton) ]

    Gene ID: 105796692, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC105796692
    Gene description
    auxin-responsive protein IAA4
    Locus tag
    B456_005G046400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gossypium raimondii
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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    Genomic context

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    See LOC105796692 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    101 current ASM2569854v1 (GCF_025698545.1) 3 NC_068567.1 (4414467..4415783, complement)
    100 previous assembly Graimondii2_0 (GCF_000327365.1) 5 NC_026933.1 (4405396..4406742, complement)

    Chromosome 3 - NC_068567.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105796690 Neighboring gene CBL-interacting serine/threonine-protein kinase 7 Neighboring gene auxin-responsive protein IAA14 Neighboring gene uncharacterized LOC105796697

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    auxin-responsive protein IAA4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM2569854v1 Primary Assembly

    Genomic

    1. NC_068567.1 Reference ASM2569854v1 Primary Assembly

      Range
      4414467..4415783 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012626476.2 → XP_012481930.1  auxin-responsive protein IAA4

      See identical proteins and their annotated locations for XP_012481930.1

      UniProtKB/TrEMBL
      A0A0D2PKN8, A0A0D2PKN9
      Conserved Domains (1) summary
      pfam02309
      Location:15 → 187
      AUX_IAA; AUX/IAA family
    Nucleotide Protein
    Heading Accession and Version

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