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    UMAG_00542 uncharacterized protein [ Mycosarcoma maydis (corn smut) ]

    Gene ID: 23561811, updated on 6-Nov-2024

    Summary

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    Gene symbol
    UMAG_00542
    Gene description
    uncharacterized protein
    Locus tag
    UMAG_00542
    See related
    FungiDB:UMAG_00542; VEuPathDB:UMAG_00542
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mycosarcoma maydis (strain: 521, culture-collection: FGSC:9021, type-material: neotype of Uredo maydis)
    Lineage
    Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Mycosarcoma
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    Genomic context

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    See UMAG_00542 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_026478.1 (1577823..1580075)

    Chromosome 1 - NC_026478.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_026478.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis. Kämper J, et al. Nature, 2006 Nov 2. PMID 17080091
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein
    XP_011386378.1
    • related to HRD1 - ubiquitin-protein ligase

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_026478.1 Reference assembly

      Range
      1577823..1580075
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011388076.1 → XP_011386378.1  uncharacterized protein UMAG_00542 [Mycosarcoma maydis]

      See identical proteins and their annotated locations for XP_011386378.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0D1D175
      Conserved Domains (2) summary
      COG5243
      Location:14 → 383
      HRD1; HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
      pfam13639
      Location:351 → 377
      zf-RING_2; Ring finger domain
    Nucleotide Protein
    Heading Accession and Version

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