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    LOC105157948 probable xyloglucan 6-xylosyltransferase 5 [ Sesamum indicum (sesame) ]

    Gene ID: 105157948, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC105157948
    Gene description
    probable xyloglucan 6-xylosyltransferase 5
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sesamum indicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
    Annotation information
    Annotation category: partial on reference assembly
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    Genomic context

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    See LOC105157948 in Genome Data Viewer
    Location:
    chromosome: LG3
    Exon count:
    3
    Annotation release Status Assembly LG Location
    101 current S_indicum_v1.0 (GCF_000512975.1) LG3 NC_026147.1 (10022055..10025433)

    Linkage Group LG3 - NC_026147.1Genomic Context describing neighboring genes Neighboring gene two-component response regulator-like APRR1 Neighboring gene vesicle transport v-SNARE 13 Neighboring gene uncharacterized LOC105157949 Neighboring gene retrovirus-related Pol polyprotein from transposon TNT 1-94

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_026147.1 Chromosome LG3 Reference S_indicum_v1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Development and validation of genic-SSR markers in sesame by RNA-seq. Zhang H, et al. BMC Genomics, 2012 Jul 16. PMID 22800194, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hexosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in xyloglucan biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in trans-Golgi network IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable xyloglucan 6-xylosyltransferase 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sesamum indicum Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference S_indicum_v1.0 Primary Assembly

    Genomic

    1. NC_026147.1 Reference S_indicum_v1.0 Primary Assembly

      Range
      10022055..10025433
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011074496.2 → XP_011072798.1  probable xyloglucan 6-xylosyltransferase 5

      UniProtKB/TrEMBL
      A0A6I9STU8
      Conserved Domains (1) summary
      PLN03182
      Location:54 → 466
      PLN03182; xyloglucan 6-xylosyltransferase; Provisional
    Nucleotide Protein
    Heading Accession and Version

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