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    PNPLA4 patatin like phospholipase domain containing 4 [ Bison bison bison ]

    Gene ID: 104981013, updated on 18-Sep-2024

    Summary

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    Gene symbol
    PNPLA4
    Gene description
    patatin like phospholipase domain containing 4
    See related
    Ensembl:ENSBBBG00000017745
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bison bison bison (sub-species: bison)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bison
    Orthologs
    human all
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    Genomic context

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    See PNPLA4 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    100 current Bison_UMD1.0 (GCF_000754665.1) Unplaced Scaffold NW_011495066.1 (1042909..1170372, complement)

    NW_011495066.1Genomic Context describing neighboring genes Neighboring gene ATP-dependent RNA helicase DDX3X-like Neighboring gene angiotensin II receptor type 2 Neighboring gene uncharacterized LOC104981020 Neighboring gene anosmin 1 Neighboring gene uncharacterized LOC104981015

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_011495066.1 Unplaced Scaffold Reference Bison_UMD1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables retinyl-palmitate esterase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables triacylglycerol lipase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lipid homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in triglyceride catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in lipid droplet IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    patatin-like phospholipase domain-containing protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Bison bison bison Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Bison_UMD1.0 Primary Assembly

    Genomic

    1. NW_011495066.1 Reference Bison_UMD1.0 Primary Assembly

      Range
      1042909..1170372 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010829900.1 → XP_010828202.1  patatin-like phospholipase domain-containing protein 4 isoform X3

      UniProtKB/TrEMBL
      A0A6P3GNE7
      Conserved Domains (1) summary
      cd07222
      Location:5 → 210
      Pat_PNPLA4; Patatin-like phospholipase domain containing protein 4

    2. XM_010829901.1 → XP_010828203.1  patatin-like phospholipase domain-containing protein 4 isoform X4

      UniProtKB/TrEMBL
      A0A6P3G972
      Conserved Domains (1) summary
      cd07222
      Location:5 → 214
      Pat_PNPLA4; Patatin-like phospholipase domain containing protein 4

    3. XM_010829895.1 → XP_010828197.1  patatin-like phospholipase domain-containing protein 4 isoform X1

      See identical proteins and their annotated locations for XP_010828197.1

      UniProtKB/TrEMBL
      A0A6P3GFD2
      Conserved Domains (1) summary
      cd07222
      Location:5 → 250
      Pat_PNPLA4; Patatin-like phospholipase domain containing protein 4

    4. XM_010829891.1 → XP_010828193.1  patatin-like phospholipase domain-containing protein 4 isoform X1

      See identical proteins and their annotated locations for XP_010828193.1

      UniProtKB/TrEMBL
      A0A6P3GFD2
      Conserved Domains (1) summary
      cd07222
      Location:5 → 250
      Pat_PNPLA4; Patatin-like phospholipase domain containing protein 4

    5. XM_010829890.1 → XP_010828192.1  patatin-like phospholipase domain-containing protein 4 isoform X1

      See identical proteins and their annotated locations for XP_010828192.1

      UniProtKB/TrEMBL
      A0A6P3GFD2
      Conserved Domains (1) summary
      cd07222
      Location:5 → 250
      Pat_PNPLA4; Patatin-like phospholipase domain containing protein 4

    6. XM_010829894.1 → XP_010828196.1  patatin-like phospholipase domain-containing protein 4 isoform X1

      See identical proteins and their annotated locations for XP_010828196.1

      UniProtKB/TrEMBL
      A0A6P3GFD2
      Conserved Domains (1) summary
      cd07222
      Location:5 → 250
      Pat_PNPLA4; Patatin-like phospholipase domain containing protein 4

    7. XM_010829893.1 → XP_010828195.1  patatin-like phospholipase domain-containing protein 4 isoform X1

      See identical proteins and their annotated locations for XP_010828195.1

      UniProtKB/TrEMBL
      A0A6P3GFD2
      Conserved Domains (1) summary
      cd07222
      Location:5 → 250
      Pat_PNPLA4; Patatin-like phospholipase domain containing protein 4

    8. XM_010829899.1 → XP_010828201.1  patatin-like phospholipase domain-containing protein 4 isoform X2

      UniProtKB/TrEMBL
      A0A6P3GFD6
      Conserved Domains (1) summary
      cd07222
      Location:5 → 228
      Pat_PNPLA4; Patatin-like phospholipase domain containing protein 4

    9. XM_010829889.1 → XP_010828191.1  patatin-like phospholipase domain-containing protein 4 isoform X1

      See identical proteins and their annotated locations for XP_010828191.1

      UniProtKB/TrEMBL
      A0A6P3GFD2
      Conserved Domains (1) summary
      cd07222
      Location:5 → 250
      Pat_PNPLA4; Patatin-like phospholipase domain containing protein 4

    10. XM_010829896.1 → XP_010828198.1  patatin-like phospholipase domain-containing protein 4 isoform X1

      See identical proteins and their annotated locations for XP_010828198.1

      UniProtKB/TrEMBL
      A0A6P3GFD2
      Conserved Domains (1) summary
      cd07222
      Location:5 → 250
      Pat_PNPLA4; Patatin-like phospholipase domain containing protein 4

    11. XM_010829892.1 → XP_010828194.1  patatin-like phospholipase domain-containing protein 4 isoform X1

      See identical proteins and their annotated locations for XP_010828194.1

      UniProtKB/TrEMBL
      A0A6P3GFD2
      Conserved Domains (1) summary
      cd07222
      Location:5 → 250
      Pat_PNPLA4; Patatin-like phospholipase domain containing protein 4

    12. XM_010829897.1 → XP_010828199.1  patatin-like phospholipase domain-containing protein 4 isoform X1

      See identical proteins and their annotated locations for XP_010828199.1

      UniProtKB/TrEMBL
      A0A6P3GFD2
      Related
      ENSBBBP00000009596.1, ENSBBBT00000017906.1
      Conserved Domains (1) summary
      cd07222
      Location:5 → 250
      Pat_PNPLA4; Patatin-like phospholipase domain containing protein 4

    RNA

    1. XR_824323.1 RNA Sequence

    2. XR_824322.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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