U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    her6 hairy-related 6 [ Esox lucius (northern pike) ]

    Gene ID: 105011317, updated on 18-Jun-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    her6
    Gene description
    hairy-related 6
    See related
    Ensembl:ENSELUG00000014372
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Esox lucius
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
    Also known as
    hes1
    Orthologs
    human zebrafish all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See her6 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    104 current fEsoLuc1.pri (GCF_011004845.1) 8 NC_047576.1 (1751490..1753463, complement)
    103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG08 NC_025975.4 (1744009..1745982, complement)

    Chromosome 8 - NC_047576.1Genomic Context describing neighboring genes Neighboring gene histidine-rich protein PFHRP-III-like Neighboring gene carboxypeptidase N subunit 2 Neighboring gene OPA1 mitochondrial dynamin like GTPase Neighboring gene ubiquitin-like with PHD and ring finger domains 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in Notch signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in anterior/posterior pattern specification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of neuron differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of neurogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    hairy-related 6
    Names
    hes family bHLH transcription factor 1
    transcription factor HES-1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fEsoLuc1.pri Primary Assembly

    Genomic

    1. NC_047576.1 Reference fEsoLuc1.pri Primary Assembly

      Range
      1751490..1753463 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010871246.3 → XP_010869548.1  hairy-related 6

      UniProtKB/TrEMBL
      A0A3P8YCL3, A0A6Q2Z5A4
      Related
      ENSELUP00000014327.1, ENSELUT00000023082.3
      Conserved Domains (2) summary
      cd00083
      Location:32 → 95
      HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
      pfam07527
      Location:110 → 148
      Hairy_orange; Hairy Orange
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.