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    LOC104877692 probable disease resistance protein At5g45440 [ Vitis vinifera (wine grape) ]

    Gene ID: 104877692, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC104877692
    Gene description
    probable disease resistance protein At5g45440
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
    Also known as
    GO:0000166 GO:0005524 GO:0005515 GO:0006915 GO:0006952
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    Genomic context

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    See LOC104877692 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 19 NC_081823.1 (13694734..13696023)
    102 previous assembly 12X (GCF_000003745.3) 19 NC_012025.3 (13656601..13657890)

    Chromosome 19 - NC_081823.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450 CYP72A219 Neighboring gene cytochrome P450 CYP72A219 Neighboring gene cytochrome P450 72A397-like Neighboring gene uncharacterized LOC104878688 Neighboring gene uncharacterized LOC100250505 Neighboring gene uncharacterized LOC132253463

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to other organism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable disease resistance protein At5g45440

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081823.1 Reference ASM3070453v1 Primary Assembly

      Range
      13694734..13696023
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010646469.1 → XP_010644771.1  probable disease resistance protein At5g45440

      UniProtKB/TrEMBL
      A0A438G265, A0A438G3Y7
      Conserved Domains (1) summary
      pfam00931
      Location:160 → 420
      NB-ARC; NB-ARC domain
    Nucleotide Protein
    Heading Accession and Version

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