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    LOC100263697 probable L-type lectin-domain containing receptor kinase S.5 [ Vitis vinifera (wine grape) ]

    Gene ID: 100263697, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100263697
    Gene description
    probable L-type lectin-domain containing receptor kinase S.5
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100263697 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 18 NC_081822.1 (31135859..31138381)
    102 previous assembly 12X (GCF_000003745.3) 18 NC_012024.3 (25769015..25771485)

    Chromosome 18 - NC_081822.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein phosphatase 7 long form homolog Neighboring gene serine/threonine-protein phosphatase 7 long form homolog Neighboring gene uncharacterized LOC109121636 Neighboring gene probable L-type lectin-domain containing receptor kinase S.5-like Neighboring gene probable L-type lectin-domain containing receptor kinase S.5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable L-type lectin-domain containing receptor kinase S.5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081822.1 Reference ASM3070453v1 Primary Assembly

      Range
      31135859..31138381
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002280271.5 → XP_002280307.3  probable L-type lectin-domain containing receptor kinase S.5

      UniProtKB/TrEMBL
      A0A438BMM1, A0A438IE28
      Conserved Domains (3) summary
      cd06899
      Location:34 → 256
      lectin_legume_LecRK_Arcelin_ConA; legume lectins, lectin-like receptor kinases, arcelin, concanavalinA, and alpha-amylase inhibitor
      smart00221
      Location:335 → 599
      STYKc; Protein kinase; unclassified specificity
      cd14066
      Location:336 → 608
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
    Nucleotide Protein
    Heading Accession and Version

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