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    LOC100254646 mannosylglycoprotein endo-beta-mannosidase [ Vitis vinifera (wine grape) ]

    Gene ID: 100254646, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100254646
    Gene description
    mannosylglycoprotein endo-beta-mannosidase
    Locus tag
    VIT_00000073001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100254646 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 14 NC_081818.1 (2956204..2968899)
    102 previous assembly 12X (GCF_000003745.3) 14 NC_012020.3 (3221089..3234060, complement)

    Chromosome 14 - NC_081818.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100259697 Neighboring gene long chain acyl-CoA synthetase 7, peroxisomal Neighboring gene germin-like protein 3 Neighboring gene germin-like protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
    2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mannosylglycoprotein endo-beta-mannosidase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081818.1 Reference ASM3070453v1 Primary Assembly

      Range
      2956204..2968899
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002284540.4 → XP_002284576.1  mannosylglycoprotein endo-beta-mannosidase

      See identical proteins and their annotated locations for XP_002284576.1

      UniProtKB/TrEMBL
      A5AVM0, F6HZ06
      Conserved Domains (3) summary
      pfam00703
      Location:209 → 328
      Glyco_hydro_2; Glycosyl hydrolases family 2
      pfam02837
      Location:98 → 152
      Glyco_hydro_2_N; Glycosyl hydrolases family 2, sugar binding domain
      cl23725
      Location:340 → 479
      Glyco_hydro_1; Glycosyl hydrolase family 1

    2. XM_010661555.3 → XP_010659857.1  mannosylglycoprotein endo-beta-mannosidase

      See identical proteins and their annotated locations for XP_010659857.1

      UniProtKB/TrEMBL
      A5AVM0, F6HZ06
      Conserved Domains (3) summary
      pfam00703
      Location:209 → 328
      Glyco_hydro_2; Glycosyl hydrolases family 2
      pfam02837
      Location:98 → 152
      Glyco_hydro_2_N; Glycosyl hydrolases family 2, sugar binding domain
      cl23725
      Location:340 → 479
      Glyco_hydro_1; Glycosyl hydrolase family 1
    Nucleotide Protein
    Heading Accession and Version

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