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    LOC100246727 OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 6 [ Vitis vinifera (wine grape) ]

    Gene ID: 100246727, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100246727
    Gene description
    OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 6
    Locus tag
    VIT_00036084001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100246727 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 6 NC_081810.1 (23881542..23892868)
    102 previous assembly 12X (GCF_000003745.3) 6 NC_012012.3 (20868516..20879678)

    Chromosome 6 - NC_081810.1Genomic Context describing neighboring genes Neighboring gene mitochondrial fission protein ELM1 Neighboring gene UPF0497 membrane protein 1 Neighboring gene mRNA-decapping enzyme-like protein Neighboring gene small RNA-binding protein 11, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
    2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables K63-linked deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 6
    Names
    OTU domain-containing protein 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081810.1 Reference ASM3070453v1 Primary Assembly

      Range
      23881542..23892868
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010653564.3 → XP_010651866.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 6

      See identical proteins and their annotated locations for XP_010651866.1

      UniProtKB/TrEMBL
      F6HHD7
      Conserved Domains (1) summary
      cl19932
      Location:243 → 352
      OTU; OTU-like cysteine protease

    2. XM_002273173.5 → XP_002273209.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 6

      See identical proteins and their annotated locations for XP_002273209.1

      UniProtKB/TrEMBL
      F6HHD7
      Conserved Domains (1) summary
      cl19932
      Location:243 → 352
      OTU; OTU-like cysteine protease

    3. XM_010653565.3 → XP_010651867.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 6

      See identical proteins and their annotated locations for XP_010651867.1

      UniProtKB/TrEMBL
      F6HHD7
      Conserved Domains (1) summary
      cl19932
      Location:243 → 352
      OTU; OTU-like cysteine protease
    Nucleotide Protein
    Heading Accession and Version

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