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    LOC100255351 ubiquitin-conjugating enzyme E2 7 [ Vitis vinifera (wine grape) ]

    Gene ID: 100255351, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100255351
    Gene description
    ubiquitin-conjugating enzyme E2 7
    Locus tag
    VIT_00024998001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100255351 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 6 NC_081810.1 (5417787..5431408, complement)
    102 previous assembly 12X (GCF_000003745.3) 6 NC_012012.3 (5387222..5399999, complement)

    Chromosome 6 - NC_081810.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100248378 Neighboring gene uncharacterized LOC100250180 Neighboring gene osmotin-like protein Neighboring gene uncharacterized LOC104879552

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
    2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin conjugating enzyme activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein polyubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin-conjugating enzyme E2 7

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081810.1 Reference ASM3070453v1 Primary Assembly

      Range
      5417787..5431408 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010652739.3 → XP_010651041.1  ubiquitin-conjugating enzyme E2 7 isoform X1

      Conserved Domains (2) summary
      COG5078
      Location:22 → 152
      COG5078; Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
      pfam00179
      Location:22 → 152
      UQ_con; Ubiquitin-conjugating enzyme

    2. XM_059737455.1 → XP_059593438.1  ubiquitin-conjugating enzyme E2 7 isoform X1

    3. XM_002284080.4 → XP_002284116.1  ubiquitin-conjugating enzyme E2 7 isoform X3

      UniProtKB/TrEMBL
      F6GV29
      Conserved Domains (2) summary
      COG5078
      Location:22 → 166
      COG5078; Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
      pfam00179
      Location:22 → 163
      UQ_con; Ubiquitin-conjugating enzyme

    4. XM_010652740.3 → XP_010651042.1  ubiquitin-conjugating enzyme E2 7 isoform X2

      See identical proteins and their annotated locations for XP_010651042.1

      Conserved Domains (2) summary
      COG5078
      Location:22 → 145
      COG5078; Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
      pfam00179
      Location:22 → 150
      UQ_con; Ubiquitin-conjugating enzyme

    5. XM_010652744.3 → XP_010651046.1  ubiquitin-conjugating enzyme E2 7 isoform X5

      See identical proteins and their annotated locations for XP_010651046.1

      UniProtKB/TrEMBL
      A0A438G1T9
      Conserved Domains (2) summary
      COG5078
      Location:22 → 145
      COG5078; Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
      pfam00179
      Location:22 → 146
      UQ_con; Ubiquitin-conjugating enzyme

    6. XM_010652741.3 → XP_010651043.1  ubiquitin-conjugating enzyme E2 7 isoform X2

      See identical proteins and their annotated locations for XP_010651043.1

      Conserved Domains (2) summary
      COG5078
      Location:22 → 145
      COG5078; Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
      pfam00179
      Location:22 → 150
      UQ_con; Ubiquitin-conjugating enzyme

    7. XM_010652745.3 → XP_010651047.1  ubiquitin-conjugating enzyme E2 7 isoform X5

      See identical proteins and their annotated locations for XP_010651047.1

      UniProtKB/TrEMBL
      A0A438G1T9
      Conserved Domains (2) summary
      COG5078
      Location:22 → 145
      COG5078; Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
      pfam00179
      Location:22 → 146
      UQ_con; Ubiquitin-conjugating enzyme

    8. XM_010652743.3 → XP_010651045.1  ubiquitin-conjugating enzyme E2 7 isoform X4

      UniProtKB/TrEMBL
      A0A438G1T9
      Conserved Domains (2) summary
      COG5078
      Location:22 → 150
      COG5078; Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
      pfam00179
      Location:22 → 150
      UQ_con; Ubiquitin-conjugating enzyme

    9. XM_010652742.3 → XP_010651044.1  ubiquitin-conjugating enzyme E2 7 isoform X2

      See identical proteins and their annotated locations for XP_010651044.1

      Conserved Domains (2) summary
      COG5078
      Location:22 → 145
      COG5078; Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
      pfam00179
      Location:22 → 150
      UQ_con; Ubiquitin-conjugating enzyme
    Nucleotide Protein
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