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    LOC100245461 transcription factor ICE1 [ Vitis vinifera (wine grape) ]

    Gene ID: 100245461, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC100245461
    Gene description
    transcription factor ICE1
    Locus tag
    VIT_00004940001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
    Also known as
    ICE1
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    Genomic context

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    See LOC100245461 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 1 NC_081805.1 (27095100..27098195)
    102 previous assembly 12X (GCF_000003745.3) 1 NC_012007.3 (21696139..21699195)

    Chromosome 1 - NC_081805.1Genomic Context describing neighboring genes Neighboring gene serine carboxypeptidase-like 45 Neighboring gene pentatricopeptide repeat-containing protein At5g13270, chloroplastic Neighboring gene aspartokinase 1, chloroplastic Neighboring gene auxin response factor 2A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor ICE1
    Names
    inducer of CBF expression 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081805.1 Reference ASM3070453v1 Primary Assembly

      Range
      27095100..27098195
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010658531.3 → XP_010656833.1  transcription factor ICE1

      UniProtKB/TrEMBL
      A0A438D169, F6HWQ1, W8SKG2
      Conserved Domains (3) summary
      cd04873
      Location:445 → 505
      ACT_UUR-ACR-like; ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD
      smart00353
      Location:333 → 377
      HLH; helix loop helix domain
      cl09653
      Location:248 → 315
      Btz; CASC3/Barentsz eIF4AIII binding
    Nucleotide Protein
    Heading Accession and Version

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