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    LOC104817963 homeobox-leucine zipper protein ATHB-15 [ Tarenaya hassleriana ]

    Gene ID: 104817963, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC104817963
    Gene description
    homeobox-leucine zipper protein ATHB-15
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tarenaya hassleriana
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; New World clade; Tarenaya
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    Genomic context

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    See LOC104817963 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    101 current ASM46358v1 (GCF_000463585.1) Unplaced Scaffold NW_010966021.1 (1639677..1645787, complement)

    NW_010966021.1Genomic Context describing neighboring genes Neighboring gene ABC transporter G family member 29 Neighboring gene uncharacterized LOC104817962 Neighboring gene nuclear pore complex protein NUP35 Neighboring gene CASP-like protein 3A1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_010966021.1 Unplaced Scaffold Reference ASM46358v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    homeobox-leucine zipper protein ATHB-15

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Tarenaya hassleriana Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM46358v1

    Genomic

    1. NW_010966021.1 Reference ASM46358v1

      Range
      1639677..1645787 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010547370.2 → XP_010545672.1  homeobox-leucine zipper protein ATHB-15 isoform X1

      See identical proteins and their annotated locations for XP_010545672.1

      Conserved Domains (4) summary
      cd08875
      Location:155 → 371
      START_ArGLABRA2_like; C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins
      cd14686
      Location:69 → 108
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
      pfam00046
      Location:17 → 74
      Homeobox; Homeobox domain
      pfam08670
      Location:696 → 834
      MEKHLA; MEKHLA domain

    2. XM_010547369.2 → XP_010545671.1  homeobox-leucine zipper protein ATHB-15 isoform X1

      See identical proteins and their annotated locations for XP_010545671.1

      Conserved Domains (4) summary
      cd08875
      Location:155 → 371
      START_ArGLABRA2_like; C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins
      cd14686
      Location:69 → 108
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
      pfam00046
      Location:17 → 74
      Homeobox; Homeobox domain
      pfam08670
      Location:696 → 834
      MEKHLA; MEKHLA domain

    3. XM_010547368.2 → XP_010545670.1  homeobox-leucine zipper protein ATHB-15 isoform X1

      See identical proteins and their annotated locations for XP_010545670.1

      Conserved Domains (4) summary
      cd08875
      Location:155 → 371
      START_ArGLABRA2_like; C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins
      cd14686
      Location:69 → 108
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
      pfam00046
      Location:17 → 74
      Homeobox; Homeobox domain
      pfam08670
      Location:696 → 834
      MEKHLA; MEKHLA domain

    4. XM_010547371.2 → XP_010545673.1  homeobox-leucine zipper protein ATHB-15 isoform X2

      Conserved Domains (4) summary
      cd08875
      Location:155 → 371
      START_ArGLABRA2_like; C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins
      cd14686
      Location:69 → 108
      bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
      pfam00046
      Location:17 → 74
      Homeobox; Homeobox domain
      pfam08670
      Location:695 → 833
      MEKHLA; MEKHLA domain
    Nucleotide Protein
    Heading Accession and Version

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