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    LSM6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated [ Corvus cornix cornix ]

    Gene ID: 104697237, updated on 12-Mar-2024

    Summary

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    Gene symbol
    LSM6
    Gene description
    LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated
    See related
    EnsemblRapid:ENSCCCG00025002918
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Corvus cornix cornix (sub-species: cornix)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Corvoidea; Corvidae; Corvus
    Orthologs
    human mouse all
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    Genomic context

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    See LSM6 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    104 current ASM73873v5 (GCF_000738735.5) 4 NC_046334.1 (14810206..14816187, complement)
    101 previous assembly Hooded_Crow_genome (GCF_000738735.1) Unplaced Scaffold NW_010960084.1 (17940037..17945815)

    Chromosome 4 - NC_046334.1Genomic Context describing neighboring genes Neighboring gene serine protease 48 Neighboring gene reeler domain containing 1 Neighboring gene zinc finger protein 827 Neighboring gene metabolism of cobalamin associated A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in maturation of SSU-rRNA IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in P-body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U4/U6 x U5 tri-snRNP complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U6 snRNP IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of sno(s)RNA-containing ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U6 snRNA-associated Sm-like protein LSm6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Corvus cornix cornix Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM73873v5 Primary Assembly

    Genomic

    1. NC_046334.1 Reference ASM73873v5 Primary Assembly

      Range
      14810206..14816187 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039550520.1 → XP_039406454.1  U6 snRNA-associated Sm-like protein LSm6

      Conserved Domains (1) summary
      cd01726
      Location:7 → 74
      LSm6; Like-Sm protein 6

    2. XM_010411995.3 → XP_010410297.1  U6 snRNA-associated Sm-like protein LSm6

      See identical proteins and their annotated locations for XP_010410297.1

      Related
      ENSCCCP00025005346.1, ENSCCCT00025005912.1
      Conserved Domains (1) summary
      cd01726
      Location:7 → 74
      LSm6; Like-Sm protein 6
    Nucleotide Protein
    Heading Accession and Version

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