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    LOC101256949 putative late blight resistance protein homolog R1B-16 [ Solanum lycopersicum (tomato) ]

    Gene ID: 101256949, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC101256949
    Gene description
    putative late blight resistance protein homolog R1B-16
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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    Genomic context

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    See LOC101256949 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    103 current SL3.0 (GCF_000188115.4) 12 NC_015449.3 (593218..597845, complement)
    102 previous assembly SL2.50 (GCF_000188115.3) 12 NC_015449.2 (593209..597811, complement)

    Chromosome 12 - NC_015449.3Genomic Context describing neighboring genes Neighboring gene putative E3 ubiquitin-protein ligase COP1 Neighboring gene ethylene response factor F.6 Neighboring gene uncharacterized LOC101252149 Neighboring gene protein-tyrosine-phosphatase IBR5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to other organism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative late blight resistance protein homolog R1B-16

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SL3.0 Primary Assembly

    Genomic

    1. NC_015449.3 Reference SL3.0 Primary Assembly

      Range
      593218..597845 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010315373.3 → XP_010313675.1  putative late blight resistance protein homolog R1B-16

      See identical proteins and their annotated locations for XP_010313675.1

      Conserved Domains (3) summary
      cd14798
      Location:2 → 123
      RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
      pfam00931
      Location:157 → 453
      NB-ARC; NB-ARC domain
      cl26793
      Location:588 → 901
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional

    2. XM_026028778.1 → XP_025884563.1  putative late blight resistance protein homolog R1B-16

      Conserved Domains (3) summary
      cd14798
      Location:2 → 123
      RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
      pfam00931
      Location:157 → 453
      NB-ARC; NB-ARC domain
      cl26793
      Location:588 → 901
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    Nucleotide Protein
    Heading Accession and Version

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