U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    LOC101245353 putative E3 ubiquitin-protein ligase LIN-1 [ Solanum lycopersicum (tomato) ]

    Gene ID: 101245353, updated on 9-Nov-2023

    Summary

    Gene symbol
    LOC101245353
    Gene description
    putative E3 ubiquitin-protein ligase LIN-1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LOC101245353 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    103 current SL3.0 (GCF_000188115.4) 4 NC_015441.3 (54993719..55000710)
    102 previous assembly SL2.50 (GCF_000188115.3) 4 NC_015441.2 (55053545..55060473)

    Chromosome 4 - NC_015441.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112941288 Neighboring gene protein kinase STUNTED-like Neighboring gene F-box protein At5g03100-like Neighboring gene peroxisome biogenesis protein 1

    Genomic regions, transcripts, and products

    General protein information

    Preferred Names
    putative E3 ubiquitin-protein ligase LIN-1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SL3.0 Primary Assembly

    Genomic

    1. NC_015441.3 Reference SL3.0 Primary Assembly

      Range
      54993719..55000710
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010321417.3XP_010319719.1  putative E3 ubiquitin-protein ligase LIN-1 isoform X3

      UniProtKB/TrEMBL
      A0A3Q7GY31
      Conserved Domains (5) summary
      smart00504
      Location:505569
      Ubox; Modified RING finger domain
      COG2319
      Location:12121481
      WD40; WD40 repeat [General function prediction only]
      cd00020
      Location:826927
      ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
      sd00039
      Location:12451319
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:11991479
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    2. XM_010321415.3XP_010319717.1  putative E3 ubiquitin-protein ligase LIN-1 isoform X1

      See identical proteins and their annotated locations for XP_010319717.1

      UniProtKB/TrEMBL
      A0A3Q7GY31
      Conserved Domains (5) summary
      smart00504
      Location:507571
      Ubox; Modified RING finger domain
      COG2319
      Location:12141483
      WD40; WD40 repeat [General function prediction only]
      cd00020
      Location:828929
      ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
      sd00039
      Location:12471321
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:12011481
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    3. XM_010321416.3XP_010319718.1  putative E3 ubiquitin-protein ligase LIN-1 isoform X2

      UniProtKB/TrEMBL
      A0A3Q7GY31
      Conserved Domains (5) summary
      smart00504
      Location:506570
      Ubox; Modified RING finger domain
      COG2319
      Location:12131482
      WD40; WD40 repeat [General function prediction only]
      cd00020
      Location:827928
      ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
      sd00039
      Location:12461320
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:12001480
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    4. XM_010321414.3XP_010319716.1  putative E3 ubiquitin-protein ligase LIN-1 isoform X1

      See identical proteins and their annotated locations for XP_010319716.1

      UniProtKB/TrEMBL
      A0A3Q7GY31
      Conserved Domains (5) summary
      smart00504
      Location:507571
      Ubox; Modified RING finger domain
      COG2319
      Location:12141483
      WD40; WD40 repeat [General function prediction only]
      cd00020
      Location:828929
      ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
      sd00039
      Location:12471321
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:12011481
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...