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    LOC101261676 protein DA1-related 1 [ Solanum lycopersicum (tomato) ]

    Gene ID: 101261676, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC101261676
    Gene description
    protein DA1-related 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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    Genomic context

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    See LOC101261676 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    103 current SL3.0 (GCF_000188115.4) 2 NC_015439.3 (52240275..52244760, complement)
    102 previous assembly SL2.50 (GCF_000188115.3) 2 NC_015439.2 (51603021..51607537, complement)

    Chromosome 2 - NC_015439.3Genomic Context describing neighboring genes Neighboring gene lysM domain receptor-like kinase 4 Neighboring gene LysM domain receptor-like kinase 7 Neighboring gene BEL1-like homeodomain protein 2 Neighboring gene BTB/POZ domain-containing protein At3g50780

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein DA1-related 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SL3.0 Primary Assembly

    Genomic

    1. NC_015439.3 Reference SL3.0 Primary Assembly

      Range
      52240275..52244760 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004232040.4 → XP_004232088.1  protein DA1-related 1

      See identical proteins and their annotated locations for XP_004232088.1

      UniProtKB/TrEMBL
      K4BCE4
      Conserved Domains (2) summary
      cd09396
      Location:147 → 199
      LIM_DA1; The Lim domain of DA1
      pfam12315
      Location:296 → 510
      DUF3633; Protein of unknown function (DUF3633)

    2. XM_010317881.3 → XP_010316183.1  protein DA1-related 1

      See identical proteins and their annotated locations for XP_010316183.1

      UniProtKB/TrEMBL
      K4BCE4
      Conserved Domains (2) summary
      cd09396
      Location:147 → 199
      LIM_DA1; The Lim domain of DA1
      pfam12315
      Location:296 → 510
      DUF3633; Protein of unknown function (DUF3633)

    3. XM_010317880.3 → XP_010316182.1  protein DA1-related 1

      See identical proteins and their annotated locations for XP_010316182.1

      UniProtKB/TrEMBL
      K4BCE4
      Conserved Domains (2) summary
      cd09396
      Location:147 → 199
      LIM_DA1; The Lim domain of DA1
      pfam12315
      Location:296 → 510
      DUF3633; Protein of unknown function (DUF3633)

    4. XM_010317882.3 → XP_010316184.1  protein DA1-related 1

      See identical proteins and their annotated locations for XP_010316184.1

      UniProtKB/TrEMBL
      K4BCE4
      Conserved Domains (2) summary
      cd09396
      Location:147 → 199
      LIM_DA1; The Lim domain of DA1
      pfam12315
      Location:296 → 510
      DUF3633; Protein of unknown function (DUF3633)

    5. XM_010317879.3 → XP_010316181.1  protein DA1-related 1

      See identical proteins and their annotated locations for XP_010316181.1

      UniProtKB/TrEMBL
      K4BCE4
      Conserved Domains (2) summary
      cd09396
      Location:147 → 199
      LIM_DA1; The Lim domain of DA1
      pfam12315
      Location:296 → 510
      DUF3633; Protein of unknown function (DUF3633)

    6. XM_010317878.3 → XP_010316180.1  protein DA1-related 1

      See identical proteins and their annotated locations for XP_010316180.1

      UniProtKB/TrEMBL
      K4BCE4
      Conserved Domains (2) summary
      cd09396
      Location:147 → 199
      LIM_DA1; The Lim domain of DA1
      pfam12315
      Location:296 → 510
      DUF3633; Protein of unknown function (DUF3633)
    Nucleotide Protein
    Heading Accession and Version

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