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    LOC104599919 notchless protein homolog [ Nelumbo nucifera (sacred lotus) ]

    Gene ID: 104599919, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC104599919
    Gene description
    notchless protein homolog
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nelumbo nucifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Proteales; Nelumbonaceae; Nelumbo
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    Genomic context

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    See LOC104599919 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    101 current Chinese Lotus 1.1 (GCF_000365185.1) Unplaced Scaffold NW_010729100.1 (1171010..1227971, complement)

    NW_010729100.1Genomic Context describing neighboring genes Neighboring gene FAD-dependent urate hydroxylase-like Neighboring gene sterol 3-beta-glucosyltransferase UGT80B1 Neighboring gene uncharacterized LOC104599920 Neighboring gene uncharacterized LOC104599921

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_010729100.1 Unplaced Scaffold Reference Chinese Lotus 1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ribosomal large subunit assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    notchless protein homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Nelumbo nucifera Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Chinese Lotus 1.1 Primary Assembly

    Genomic

    1. NW_010729100.1 Reference Chinese Lotus 1.1 Primary Assembly

      Range
      1171010..1227971 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010262671.2 → XP_010260973.1  notchless protein homolog

      UniProtKB/TrEMBL
      A0A1U8A3P0
      Conserved Domains (4) summary
      smart00320
      Location:475 → 513
      WD40; WD40 repeats
      cd00200
      Location:142 → 472
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:195 → 233
      7WD40; WD40 repeat [structural motif]
      pfam08154
      Location:66 → 113
      NLE; NLE (NUC135) domain
    Nucleotide Protein
    Heading Accession and Version

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