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    LOC101216662 catalase isozyme 3 [ Cucumis sativus (cucumber) ]

    Gene ID: 101216662, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC101216662
    Gene description
    catalase isozyme 3
    Locus tag
    Csa_019056
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Cucumis sativus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
    Also known as
    catalase; catalase-3
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    Genomic context

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    See LOC101216662 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current Cucumber_9930_V3 (GCF_000004075.3) 6 NC_026660.2 (17704591..17708579, complement)
    101 previous assembly ASM407v2 (GCF_000004075.2) 6 NC_026660.1 (15967046..15971137, complement)

    Chromosome 6 - NC_026660.2Genomic Context describing neighboring genes Neighboring gene probable serine/threonine-protein kinase PBL21 Neighboring gene probable serine/threonine-protein kinase PIX13 Neighboring gene 50S ribosomal protein L21, mitochondrial Neighboring gene cystathionine beta-lyase, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables catalase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in hydrogen peroxide catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to hydrogen peroxide IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in peroxisome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    catalase isozyme 3
    NP_001295845.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001308916.1 → NP_001295845.1  catalase isozyme 3

      See identical proteins and their annotated locations for NP_001295845.1

      Status: PROVISIONAL

      Source sequence(s)
      GU248529
      UniProtKB/TrEMBL
      A0A0A0KDG3, E0XJQ4
      Conserved Domains (2) summary
      cd08154
      Location:18 → 485
      catalase_clade_1; Clade 1 of the heme-binding enzyme catalase
      PLN02609
      Location:1 → 492
      PLN02609; catalase

    RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cucumber_9930_V3 Primary Assembly

    Genomic

    1. NC_026660.2 Reference Cucumber_9930_V3 Primary Assembly

      Range
      17704591..17708579 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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