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    LOC103845281 rab3 GTPase-activating protein catalytic subunit [ Brassica rapa (field mustard) ]

    Gene ID: 103845281, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC103845281
    Gene description
    rab3 GTPase-activating protein catalytic subunit
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica rapa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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    Genomic context

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    See LOC103845281 in Genome Data Viewer
    Location:
    chromosome: A10
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A10 NC_024804.2 (12640541..12646923, complement)
    101 previous assembly Brapa_1.0 (GCF_000309985.1) A10 NC_024804.1 (8423845..8430096, complement)

    Chromosome A10 - NC_024804.2Genomic Context describing neighboring genes Neighboring gene protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like Neighboring gene protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5 Neighboring gene uncharacterized protein At5g39865-like Neighboring gene probable inactive receptor-like protein kinase At3g56050 Neighboring gene ETO1-like protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTPase activator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    rab3 GTPase-activating protein catalytic subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAAS_Brap_v3.01 Primary Assembly

    Genomic

    1. NC_024804.2 Reference CAAS_Brap_v3.01 Primary Assembly

      Range
      12640541..12646923 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009122113.3 → XP_009120361.1  rab3 GTPase-activating protein catalytic subunit isoform X1

      UniProtKB/TrEMBL
      M4CEL0
      Conserved Domains (1) summary
      pfam13890
      Location:570 → 734
      Rab3-GTPase_cat; Rab3 GTPase-activating protein catalytic subunit

    2. XM_009122115.3 → XP_009120363.1  rab3 GTPase-activating protein catalytic subunit isoform X3

      UniProtKB/TrEMBL
      A0A3P6DBM2
      Conserved Domains (1) summary
      pfam13890
      Location:554 → 718
      Rab3-GTPase_cat; Rab3 GTPase-activating protein catalytic subunit

    3. XM_009122114.3 → XP_009120362.1  rab3 GTPase-activating protein catalytic subunit isoform X2

      UniProtKB/TrEMBL
      M4CEL0
      Conserved Domains (1) summary
      pfam13890
      Location:570 → 734
      Rab3-GTPase_cat; Rab3 GTPase-activating protein catalytic subunit
    Nucleotide Protein
    Heading Accession and Version

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