U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    LOC103844041 ATP-dependent zinc metalloprotease FTSH 8, chloroplastic [ Brassica rapa (field mustard) ]

    Gene ID: 103844041, updated on 7-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC103844041
    Gene description
    ATP-dependent zinc metalloprotease FTSH 8, chloroplastic
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica rapa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC103844041 in Genome Data Viewer
    Location:
    chromosome: A10
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A10 NC_024804.2 (2762762..2765646, complement)
    101 previous assembly Brapa_1.0 (GCF_000309985.1) A10 NC_024804.1 (1379736..1382567)

    Chromosome A10 - NC_024804.2Genomic Context describing neighboring genes Neighboring gene probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7 Neighboring gene uncharacterized LOC103844417 Neighboring gene protein ROOT PRIMORDIUM DEFECTIVE 1 Neighboring gene uncharacterized LOC103844038

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent peptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metalloendopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast thylakoid IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    ATP-dependent zinc metalloprotease FTSH 8, chloroplastic

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAAS_Brap_v3.01 Primary Assembly

    Genomic

    1. NC_024804.2 Reference CAAS_Brap_v3.01 Primary Assembly

      Range
      2762762..2765646 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009120815.3 → XP_009119063.1  ATP-dependent zinc metalloprotease FTSH 8, chloroplastic

      See identical proteins and their annotated locations for XP_009119063.1

      UniProtKB/TrEMBL
      A0A397XI80, M4DG76
      Conserved Domains (5) summary
      CHL00176
      Location:85 → 676
      ftsH; cell division protein; Validated
      pfam00004
      Location:263 → 392
      AAA; ATPase family associated with various cellular activities (AAA)
      pfam01434
      Location:475 → 665
      Peptidase_M41; Peptidase family M41
      pfam06480
      Location:71 → 158
      FtsH_ext; FtsH Extracellular
      cl21455
      Location:226 → 284
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    2. XM_009120816.2 → XP_009119064.1  ATP-dependent zinc metalloprotease FTSH 8, chloroplastic

      See identical proteins and their annotated locations for XP_009119064.1

      UniProtKB/TrEMBL
      A0A397XI80, M4DG76
      Conserved Domains (5) summary
      CHL00176
      Location:85 → 676
      ftsH; cell division protein; Validated
      pfam00004
      Location:263 → 392
      AAA; ATPase family associated with various cellular activities (AAA)
      pfam01434
      Location:475 → 665
      Peptidase_M41; Peptidase family M41
      pfam06480
      Location:71 → 158
      FtsH_ext; FtsH Extracellular
      cl21455
      Location:226 → 284
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases