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    LOC103841175 E3 ubiquitin-protein ligase PUB22 [ Brassica rapa (field mustard) ]

    Gene ID: 103841175, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC103841175
    Gene description
    E3 ubiquitin-protein ligase PUB22
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica rapa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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    Genomic context

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    See LOC103841175 in Genome Data Viewer
    Location:
    chromosome: A9
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A09 NC_024803.2 (33669651..33674721, complement)
    101 previous assembly Brapa_1.0 (GCF_000309985.1) A9 NC_024803.1 (26242772..26244344, complement)

    Chromosome A09 - NC_024803.2Genomic Context describing neighboring genes Neighboring gene receptor-like protein 51 Neighboring gene uncharacterized LOC103841174 Neighboring gene NDR1/HIN1-like protein 10 Neighboring gene small nucleolar RNA Z247

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase PUB22

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAAS_Brap_v3.01 Primary Assembly

    Genomic

    1. NC_024803.2 Reference CAAS_Brap_v3.01 Primary Assembly

      Range
      33669651..33674721 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009117697.3 → XP_009115945.1  E3 ubiquitin-protein ligase PUB22

      UniProtKB/TrEMBL
      A0A397XZV6, A0A3P5Y4G6, M4CRT3
      Conserved Domains (1) summary
      smart00504
      Location:11 → 74
      Ubox; Modified RING finger domain
    Nucleotide Protein
    Heading Accession and Version

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