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    LOC103840172 probable transcription factor KAN2 [ Brassica rapa (field mustard) ]

    Gene ID: 103840172, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC103840172
    Gene description
    probable transcription factor KAN2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica rapa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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    Genomic context

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    See LOC103840172 in Genome Data Viewer
    Location:
    chromosome: A9
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A09 NC_024803.2 (25468924..25477400)
    101 previous assembly Brapa_1.0 (GCF_000309985.1) A9 NC_024803.1 (20200218..20206081)

    Chromosome A09 - NC_024803.2Genomic Context describing neighboring genes Neighboring gene syntaxin-22 Neighboring gene uncharacterized LOC103840171 Neighboring gene uncharacterized LOC117128119 Neighboring gene uncharacterized LOC117128508 Neighboring gene uncharacterized LOC103840173 Neighboring gene inactive poly [ADP-ribose] polymerase RCD1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription cis-regulatory region binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in abaxial cell fate specification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable transcription factor KAN2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAAS_Brap_v3.01 Primary Assembly

    Genomic

    1. NC_024803.2 Reference CAAS_Brap_v3.01 Primary Assembly

      Range
      25468924..25477400
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009116653.3 → XP_009114901.1  probable transcription factor KAN2 isoform X2

      UniProtKB/TrEMBL
      A0A397XX32
      Conserved Domains (1) summary
      TIGR01557
      Location:195 → 248
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class

    2. XM_009116652.3 → XP_009114900.1  probable transcription factor KAN2 isoform X1

      UniProtKB/TrEMBL
      A0A397XX32, M4E3A3
      Conserved Domains (1) summary
      TIGR01557
      Location:195 → 248
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    Nucleotide Protein
    Heading Accession and Version

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