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    LOC103838833 uncharacterized LOC103838833 [ Brassica rapa (field mustard) ]

    Gene ID: 103838833, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC103838833
    Gene description
    uncharacterized LOC103838833
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica rapa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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    Genomic context

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    See LOC103838833 in Genome Data Viewer
    Location:
    chromosome: A9
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A09 NC_024803.2 (21385707..21390502)
    101 previous assembly Brapa_1.0 (GCF_000309985.1) A9 NC_024803.1 (11079614..11084382)

    Chromosome A09 - NC_024803.2Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA R71 Neighboring gene RING-H2 finger protein ATL39 Neighboring gene uncharacterized LOC103838865 Neighboring gene NAD(P)H-quinone oxidoreductase subunit T, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC103838833

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAAS_Brap_v3.01 Primary Assembly

    Genomic

    1. NC_024803.2 Reference CAAS_Brap_v3.01 Primary Assembly

      Range
      21385707..21390502
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009115282.3 → XP_009113530.1  uncharacterized protein LOC103838833 isoform X1

      UniProtKB/TrEMBL
      A0A3P5YHS2
      Conserved Domains (2) summary
      COG4942
      Location:57 → 282
      EnvC; Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning]
      pfam05794
      Location:620 → 1076
      Tcp11; T-complex protein 11

    2. XM_009115284.3 → XP_009113532.1  uncharacterized protein LOC103838833 isoform X2

      UniProtKB/TrEMBL
      A0A397XWS2, M4FBB8
      Conserved Domains (2) summary
      COG4942
      Location:57 → 282
      EnvC; Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning]
      pfam05794
      Location:619 → 1075
      Tcp11; T-complex protein 11
    Nucleotide Protein
    Heading Accession and Version

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