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    LOC103836419 3-ketoacyl-CoA synthase 3 [ Brassica rapa (field mustard) ]

    Gene ID: 103836419, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC103836419
    Gene description
    3-ketoacyl-CoA synthase 3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica rapa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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    Genomic context

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    See LOC103836419 in Genome Data Viewer
    Location:
    chromosome: A8
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A08 NC_024802.2 (21989157..21991304, complement)
    101 previous assembly Brapa_1.0 (GCF_000309985.1) A8 NC_024802.1 (20758303..20760182, complement)

    Chromosome A08 - NC_024802.2Genomic Context describing neighboring genes Neighboring gene elongation factor 1-alpha 1 Neighboring gene histone H4 Neighboring gene probable NOT transcription complex subunit VIP2 Neighboring gene dirigent protein 25 Neighboring gene pentatricopeptide repeat-containing protein At1g07740, mitochondrial Neighboring gene DNA repair protein RAD51 homolog 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acyltransferase activity, transferring groups other than amino-acyl groups IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in fatty acid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    3-ketoacyl-CoA synthase 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAAS_Brap_v3.01 Primary Assembly

    Genomic

    1. NC_024802.2 Reference CAAS_Brap_v3.01 Primary Assembly

      Range
      21989157..21991304 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009112673.3 → XP_009110921.1  3-ketoacyl-CoA synthase 3

      See identical proteins and their annotated locations for XP_009110921.1

      UniProtKB/TrEMBL
      A0A397YK55, A0A3P5YC19
      Conserved Domains (2) summary
      pfam08392
      Location:26 → 313
      FAE1_CUT1_RppA; FAE1/Type III polyketide synthase-like protein
      cl21486
      Location:330 → 420
      Ketoacyl-synt_C; Beta-ketoacyl synthase, C-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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