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    LOC103832649 proteasome subunit alpha type-5-A [ Brassica rapa (field mustard) ]

    Gene ID: 103832649, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC103832649
    Gene description
    proteasome subunit alpha type-5-A
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica rapa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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    Genomic context

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    See LOC103832649 in Genome Data Viewer
    Location:
    chromosome: A8
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A08 NC_024802.2 (932121..934615)
    101 previous assembly Brapa_1.0 (GCF_000309985.1) A8 NC_024802.1 (798676..800985)

    Chromosome A08 - NC_024802.2Genomic Context describing neighboring genes Neighboring gene ethylene-responsive transcription factor RAP2-12 Neighboring gene FCS-Like Zinc finger 17-like Neighboring gene 26S proteasome regulatory subunit 7 homolog A Neighboring gene protein STRUBBELIG-RECEPTOR FAMILY 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of proteasome core complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of proteasome core complex, alpha-subunit complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    proteasome subunit alpha type-5-A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAAS_Brap_v3.01 Primary Assembly

    Genomic

    1. NC_024802.2 Reference CAAS_Brap_v3.01 Primary Assembly

      Range
      932121..934615
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009108709.3 → XP_009106957.1  proteasome subunit alpha type-5-A

      See identical proteins and their annotated locations for XP_009106957.1

      UniProtKB/TrEMBL
      A0A397Y6U0, A0A8D9HBQ8, M4EQ50
      Conserved Domains (1) summary
      cd03753
      Location:8 → 218
      proteasome_alpha_type_5; The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming ...

    2. XM_009108710.3 → XP_009106958.1  proteasome subunit alpha type-5-A

      See identical proteins and their annotated locations for XP_009106958.1

      UniProtKB/TrEMBL
      A0A397Y6U0, A0A8D9HBQ8, M4EQ50
      Conserved Domains (1) summary
      cd03753
      Location:8 → 218
      proteasome_alpha_type_5; The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming ...
    Nucleotide Protein
    Heading Accession and Version

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