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    LOC103830476 ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [ Brassica rapa (field mustard) ]

    Gene ID: 103830476, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC103830476
    Gene description
    ATP-dependent zinc metalloprotease FTSH 12, chloroplastic
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica rapa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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    Genomic context

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    See LOC103830476 in Genome Data Viewer
    Location:
    chromosome: A7
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A07 NC_024801.2 (20017286..20022468, complement)
    101 previous assembly Brapa_1.0 (GCF_000309985.1) A7 NC_024801.1 (14032277..14037438, complement)

    Chromosome A07 - NC_024801.2Genomic Context describing neighboring genes Neighboring gene protein ACTIVITY OF BC1 COMPLEX KINASE 3, chloroplastic Neighboring gene protein SOMBRERO Neighboring gene uncharacterized LOC103830477 Neighboring gene phosphoglycerate kinase 3, cytosolic Neighboring gene glyceraldehyde-3-phosphate dehydrogenase GAPCP1, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent peptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metalloendopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in embryo development ending in seed dormancy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitochondrial protein processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein-containing complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast thylakoid membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of m-AAA complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP-dependent zinc metalloprotease FTSH 12, chloroplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAAS_Brap_v3.01 Primary Assembly

    Genomic

    1. NC_024801.2 Reference CAAS_Brap_v3.01 Primary Assembly

      Range
      20017286..20022468 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009106271.3 → XP_009104519.1  ATP-dependent zinc metalloprotease FTSH 12, chloroplastic

      UniProtKB/TrEMBL
      M4CHC1
      Conserved Domains (3) summary
      TIGR01241
      Location:429 → 963
      FtsH_fam; ATP-dependent metalloprotease FtsH
      pfam00004
      Location:529 → 666
      AAA; ATPase family associated with various cellular activities (AAA)
      pfam01434
      Location:758 → 961
      Peptidase_M41; Peptidase family M41
    Nucleotide Protein
    Heading Accession and Version

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