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    LOC103830410 coatomer subunit beta'-1 [ Brassica rapa (field mustard) ]

    Gene ID: 103830410, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC103830410
    Gene description
    coatomer subunit beta'-1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica rapa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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    Genomic context

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    See LOC103830410 in Genome Data Viewer
    Location:
    chromosome: A7
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A07 NC_024801.2 (19691503..19697888)
    101 previous assembly Brapa_1.0 (GCF_000309985.1) A7 NC_024801.1 (13711346..13717673)

    Chromosome A07 - NC_024801.2Genomic Context describing neighboring genes Neighboring gene regulator of telomere elongation helicase 1 homolog Neighboring gene protein SYS1 homolog Neighboring gene transfer RNA arginine (anticodon UCG) Neighboring gene protein MLN51 homolog Neighboring gene protein FAR1-RELATED SEQUENCE 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural molecule activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intra-Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of COPI vesicle coat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    coatomer subunit beta'-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAAS_Brap_v3.01 Primary Assembly

    Genomic

    1. NC_024801.2 Reference CAAS_Brap_v3.01 Primary Assembly

      Range
      19691503..19697888
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009106189.3 → XP_009104437.1  coatomer subunit beta'-1

      UniProtKB/TrEMBL
      A0A397YMS4
      Conserved Domains (4) summary
      COG2319
      Location:24 → 473
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:17 → 297
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      pfam04053
      Location:320 → 763
      Coatomer_WDAD; Coatomer WD associated region
      sd00039
      Location:103 → 140
      7WD40; WD40 repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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