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    LOC103828000 26S proteasome regulatory subunit 10B homolog A [ Brassica rapa (field mustard) ]

    Gene ID: 103828000, updated on 25-Jan-2024

    Summary

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    Gene symbol
    LOC103828000
    Gene description
    26S proteasome regulatory subunit 10B homolog A
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica rapa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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    Genomic context

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    See LOC103828000 in Genome Data Viewer
    Location:
    chromosome: A6
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A06 NC_024800.2 (28657130..28659697)
    101 previous assembly Brapa_1.0 (GCF_000309985.1) A6 NC_024800.1 (25800887..25803412)

    Chromosome A06 - NC_024800.2Genomic Context describing neighboring genes Neighboring gene probable cysteine protease RD21B Neighboring gene probable inactive receptor kinase At5g67200 Neighboring gene COP9 signalosome complex subunit 4 Neighboring gene outer envelope pore protein 24B, chloroplastic Neighboring gene probable E3 ubiquitin-protein ligase RHG1A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables proteasome-activating activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of RNA polymerase II transcription preinitiation complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic proteasome complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of proteasome regulatory particle, base subcomplex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    26S proteasome regulatory subunit 10B homolog A
    Names
    26S protease regulatory subunit 10B homolog A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAAS_Brap_v3.01 Primary Assembly

    Genomic

    1. NC_024800.2 Reference CAAS_Brap_v3.01 Primary Assembly

      Range
      28657130..28659697
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009103570.3 → XP_009101818.1  26S proteasome regulatory subunit 10B homolog A

      See identical proteins and their annotated locations for XP_009101818.1

      UniProtKB/TrEMBL
      A0A397ZEH7, M4EXW6
      Conserved Domains (1) summary
      COG1222
      Location:18 → 390
      RPT1; ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
    Nucleotide Protein
    Heading Accession and Version

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