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    LOC103873187 dnaJ homolog subfamily B member 1 [ Brassica rapa (field mustard) ]

    Gene ID: 103873187, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC103873187
    Gene description
    dnaJ homolog subfamily B member 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica rapa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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    Genomic context

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    See LOC103873187 in Genome Data Viewer
    Location:
    chromosome: A6
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A06 NC_024800.2 (10836954..10839059)
    101 previous assembly Brapa_1.0 (GCF_000309985.1) A6 NC_024800.1 (10242036..10244117)

    Chromosome A06 - NC_024800.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117126032 Neighboring gene auxin response factor 2-like Neighboring gene L-galactono-1,4-lactone dehydrogenase, mitochondrial Neighboring gene uncharacterized LOC103873189

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein-folding chaperone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables unfolded protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chaperone cofactor-dependent protein refolding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    dnaJ homolog subfamily B member 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAAS_Brap_v3.01 Primary Assembly

    Genomic

    1. NC_024800.2 Reference CAAS_Brap_v3.01 Primary Assembly

      Range
      10836954..10839059
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009151611.3 → XP_009149859.1  dnaJ homolog subfamily B member 1

      UniProtKB/TrEMBL
      A0A397Z513, A0A8D9D5Y0, M4DNL2
      Conserved Domains (1) summary
      COG0484
      Location:1 → 334
      DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
    Nucleotide Protein
    Heading Accession and Version

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