U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    LOC103868892 probable transcription factor KAN2 [ Brassica rapa (field mustard) ]

    Gene ID: 103868892, updated on 7-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC103868892
    Gene description
    probable transcription factor KAN2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica rapa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC103868892 in Genome Data Viewer
    Location:
    chromosome: A5
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A05 NC_024799.2 (17373951..17385032)
    101 previous assembly Brapa_1.0 (GCF_000309985.1) A5 NC_024799.1 (14329088..14334320)

    Chromosome A05 - NC_024799.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117134199 Neighboring gene zinc finger BED domain-containing protein RICESLEEPER 2-like Neighboring gene uncharacterized LOC103868893 Neighboring gene dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription cis-regulatory region binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in abaxial cell fate specification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    probable transcription factor KAN2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAAS_Brap_v3.01 Primary Assembly

    Genomic

    1. NC_024799.2 Reference CAAS_Brap_v3.01 Primary Assembly

      Range
      17373951..17385032
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009146947.3 → XP_009145195.1  probable transcription factor KAN2

      UniProtKB/TrEMBL
      A0A397ZB55, M4EYF2
      Conserved Domains (1) summary
      TIGR01557
      Location:218 → 271
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases