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    LOC103868682 1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1-like [ Brassica rapa (field mustard) ]

    Gene ID: 103868682, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC103868682
    Gene description
    1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica rapa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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    Genomic context

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    See LOC103868682 in Genome Data Viewer
    Location:
    chromosome: A5
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A05 NC_024799.2 (13207437..13209320)
    101 previous assembly Brapa_1.0 (GCF_000309985.1) A5 NC_024799.1 (12366630..12367631)

    Chromosome A05 - NC_024799.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117133878 Neighboring gene uncharacterized LOC117133877 Neighboring gene uncharacterized LOC117133879 Neighboring gene ABC transporter C family member 4 Neighboring gene SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 Neighboring gene uncharacterized LOC117134046

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 1,4-dihydroxy-2-naphthoyl-CoA thioesterase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phylloquinone biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in peroxisome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAAS_Brap_v3.01 Primary Assembly

    Genomic

    1. NC_024799.2 Reference CAAS_Brap_v3.01 Primary Assembly

      Range
      13207437..13209320
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_033290902.1 → XP_033146793.1  1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1-like isoform X1

      UniProtKB/TrEMBL
      A0A397ZBP6, M4ETW7
      Conserved Domains (1) summary
      cl00509
      Location:3 → 155
      hot_dog; The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated ...

    2. XM_009146763.3 → XP_009145011.1  1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1-like isoform X1

      See identical proteins and their annotated locations for XP_009145011.1

      UniProtKB/TrEMBL
      A0A397ZBP6, M4ETW7
      Conserved Domains (1) summary
      cl00509
      Location:3 → 155
      hot_dog; The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated ...

    3. XM_009146765.3 → XP_009145013.1  1,4-dihydroxy-2-naphthoyl-CoA thioesterase 1-like isoform X2

      Conserved Domains (1) summary
      cl00509
      Location:23 → 135
      hot_dog; The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated ...
    Nucleotide Protein
    Heading Accession and Version

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