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    LOC103865582 cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 [ Brassica rapa (field mustard) ]

    Gene ID: 103865582, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC103865582
    Gene description
    cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica rapa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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    Genomic context

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    Location:
    chromosome: A4
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A04 NC_024798.2 (18765322..18775270, complement)
    101 previous assembly Brapa_1.0 (GCF_000309985.1) A4 NC_024798.1 (16077029..16079748, complement)

    Chromosome A04 - NC_024798.2Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L12-2 Neighboring gene CASP-like protein 5A1 Neighboring gene RNA-binding protein CP29B, chloroplastic Neighboring gene adenylate kinase 1, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity, hydrolyzing N-glycosyl compounds IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytokinin biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAAS_Brap_v3.01 Primary Assembly

    Genomic

    1. NC_024798.2 Reference CAAS_Brap_v3.01 Primary Assembly

      Range
      18765322..18775270 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009143390.2 → XP_009141638.1  cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 isoform X1

      UniProtKB/TrEMBL
      A0A397ZNE4, M4DL21
      Conserved Domains (1) summary
      pfam03641
      Location:58 → 187
      Lysine_decarbox; Possible lysine decarboxylase

    2. XM_033289985.1 → XP_033145876.1  cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 isoform X2

      UniProtKB/TrEMBL
      A0A397ZNE4
      Conserved Domains (1) summary
      pfam03641
      Location:27 → 156
      Lysine_decarbox; Possible lysine decarboxylase
    Nucleotide Protein
    Heading Accession and Version

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