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    LOC103859846 pumilio homolog 5 [ Brassica rapa (field mustard) ]

    Gene ID: 103859846, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC103859846
    Gene description
    pumilio homolog 5
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica rapa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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    Genomic context

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    See LOC103859846 in Genome Data Viewer
    Location:
    chromosome: A3
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A03 NC_024797.2 (19425354..19429420, complement)
    101 previous assembly Brapa_1.0 (GCF_000309985.1) A3 NC_024797.1 (18411010..18415033, complement)

    Chromosome A03 - NC_024797.2Genomic Context describing neighboring genes Neighboring gene U-box domain-containing protein 4 Neighboring gene pollen receptor-like kinase 4 Neighboring gene probable mitochondrial adenine nucleotide transporter BTL1 Neighboring gene uncharacterized LOC117132493 Neighboring gene uncharacterized LOC103859847 Neighboring gene uncharacterized LOC103859848

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in 3'-UTR-mediated mRNA destabilization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pumilio homolog 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAAS_Brap_v3.01 Primary Assembly

    Genomic

    1. NC_024797.2 Reference CAAS_Brap_v3.01 Primary Assembly

      Range
      19425354..19429420 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009137428.3 → XP_009135676.1  pumilio homolog 5 isoform X3

      UniProtKB/TrEMBL
      A0A398A8G1
      Conserved Domains (3) summary
      cd07920
      Location:439 → 759
      Pumilio; Pumilio-family RNA binding domain
      COG5099
      Location:56 → 763
      COG5099; RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis]
      pfam07990
      Location:365 → 442
      NABP; Nucleic acid binding protein NABP

    2. XM_009137427.3 → XP_009135675.1  pumilio homolog 5 isoform X2

      UniProtKB/TrEMBL
      A0A398A229
      Conserved Domains (3) summary
      cd07920
      Location:450 → 770
      Pumilio; Pumilio-family RNA binding domain
      COG5099
      Location:56 → 774
      COG5099; RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis]
      pfam07990
      Location:376 → 453
      NABP; Nucleic acid binding protein NABP

    3. XM_009137425.3 → XP_009135673.1  pumilio homolog 5 isoform X1

      See identical proteins and their annotated locations for XP_009135673.1

      UniProtKB/TrEMBL
      A0A398A229, M4CC51
      Conserved Domains (2) summary
      cd07920
      Location:487 → 807
      Pumilio; Pumilio-family RNA binding domain
      pfam07990
      Location:413 → 490
      NABP; Nucleic acid binding protein NABP
    Nucleotide Protein
    Heading Accession and Version

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