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    LOC103857164 MADS-box protein AGL72-like [ Brassica rapa (field mustard) ]

    Gene ID: 103857164, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC103857164
    Gene description
    MADS-box protein AGL72-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica rapa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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    Genomic context

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    See LOC103857164 in Genome Data Viewer
    Location:
    chromosome: A3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A03 NC_024797.2 (6821615..6828430)
    101 previous assembly Brapa_1.0 (GCF_000309985.1) A3 NC_024797.1 (6606499..6609201)

    Chromosome A03 - NC_024797.2Genomic Context describing neighboring genes Neighboring gene probable non-inhibitory serpin-Z5 Neighboring gene MADS-box protein AGL71-like Neighboring gene uncharacterized LOC103857165 Neighboring gene probable fructokinase-7 Neighboring gene receptor-like serine/threonine-protein kinase At4g25390

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    MADS-box protein AGL72-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAAS_Brap_v3.01 Primary Assembly

    Genomic

    1. NC_024797.2 Reference CAAS_Brap_v3.01 Primary Assembly

      Range
      6821615..6828430
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_033288525.1 → XP_033144416.1  MADS-box protein AGL72-like

      UniProtKB/TrEMBL
      A0A398A2H2, A0A3P5ZXZ8, M4EK38
      Conserved Domains (2) summary
      cd00265
      Location:3 → 74
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
      pfam01486
      Location:88 → 168
      K-box; K-box region

    2. XM_009134336.2 → XP_009132584.1  MADS-box protein AGL72-like

      See identical proteins and their annotated locations for XP_009132584.1

      UniProtKB/TrEMBL
      A0A398A2H2, A0A3P5ZXZ8, M4EK38
      Conserved Domains (2) summary
      cd00265
      Location:3 → 74
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
      pfam01486
      Location:88 → 168
      K-box; K-box region

    3. XM_009134335.2 → XP_009132583.1  MADS-box protein AGL72-like

      See identical proteins and their annotated locations for XP_009132583.1

      UniProtKB/TrEMBL
      A0A398A2H2, A0A3P5ZXZ8, M4EK38
      Conserved Domains (2) summary
      cd00265
      Location:3 → 74
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
      pfam01486
      Location:88 → 168
      K-box; K-box region
    Nucleotide Protein
    Heading Accession and Version

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