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    LOC103854042 two-component response regulator ARR14 [ Brassica rapa (field mustard) ]

    Gene ID: 103854042, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC103854042
    Gene description
    two-component response regulator ARR14
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica rapa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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    Genomic context

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    See LOC103854042 in Genome Data Viewer
    Location:
    chromosome: A2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A02 NC_024796.2 (24245733..24247863)
    101 previous assembly Brapa_1.0 (GCF_000309985.1) A2 NC_024796.1 (21005899..21008008, complement)

    Chromosome A02 - NC_024796.2Genomic Context describing neighboring genes Neighboring gene cleavage and polyadenylation specificity factor subunit 3-II Neighboring gene GDSL esterase/lipase At1g59030 Neighboring gene vacuolar iron transporter 1 Neighboring gene uncharacterized LOC103854040

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytokinin-activated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phosphorelay signal transduction system IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    two-component response regulator ARR14

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAAS_Brap_v3.01 Primary Assembly

    Genomic

    1. NC_024796.2 Reference CAAS_Brap_v3.01 Primary Assembly

      Range
      24245733..24247863
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009130956.3 → XP_009129204.1  two-component response regulator ARR14 isoform X1

      UniProtKB/TrEMBL
      A0A398AE47, M4ECX5
      Conserved Domains (2) summary
      TIGR01557
      Location:184 → 237
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      cd00156
      Location:14 → 126
      REC; Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; ...

    2. XM_009130957.3 → XP_009129205.1  two-component response regulator ARR14 isoform X2

      UniProtKB/TrEMBL
      A0A398AE47
      Conserved Domains (2) summary
      TIGR01557
      Location:184 → 236
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      cd00156
      Location:14 → 126
      REC; Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; ...
    Nucleotide Protein
    Heading Accession and Version

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