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    LOC103852930 uncharacterized LOC103852930 [ Brassica rapa (field mustard) ]

    Gene ID: 103852930, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC103852930
    Gene description
    uncharacterized LOC103852930
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica rapa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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    Genomic context

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    See LOC103852930 in Genome Data Viewer
    Location:
    chromosome: A2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A02 NC_024796.2 (13188980..13193294, complement)
    101 previous assembly Brapa_1.0 (GCF_000309985.1) A2 NC_024796.1 (13599927..13602234, complement)

    Chromosome A02 - NC_024796.2Genomic Context describing neighboring genes Neighboring gene probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4 Neighboring gene pathogenesis-related protein 5 Neighboring gene transfer RNA aspartic acid (anticodon GUC) Neighboring gene uncharacterized LOC103852932 Neighboring gene uncharacterized LOC103852933 Neighboring gene small nucleolar RNA R16

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of histone deacetylase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC103852930

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAAS_Brap_v3.01 Primary Assembly

    Genomic

    1. NC_024796.2 Reference CAAS_Brap_v3.01 Primary Assembly

      Range
      13188980..13193294 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009129826.3 → XP_009128074.1  uncharacterized protein LOC103852930 isoform X2

      UniProtKB/TrEMBL
      A0A398AEG9
      Conserved Domains (1) summary
      pfam13867
      Location:167 → 216
      SAP30_Sin3_bdg; Sin3 binding region of histone deacetylase complex subunit SAP30

    2. XM_009129825.3 → XP_009128073.1  uncharacterized protein LOC103852930 isoform X1

      UniProtKB/TrEMBL
      A0A398AEG9, M4CVC9
      Conserved Domains (1) summary
      pfam13867
      Location:167 → 220
      SAP30_Sin3_bdg; Sin3 binding region of histone deacetylase complex subunit SAP30
    Nucleotide Protein
    Heading Accession and Version

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