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    LOC103845959 E3 ubiquitin-protein ligase PUB24 [ Brassica rapa (field mustard) ]

    Gene ID: 103845959, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC103845959
    Gene description
    E3 ubiquitin-protein ligase PUB24
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica rapa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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    Genomic context

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    See LOC103845959 in Genome Data Viewer
    Location:
    chromosome: A1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A01 NC_024795.2 (26506282..26510076)
    101 previous assembly Brapa_1.0 (GCF_000309985.1) A1 NC_024795.1 (26655731..26657564)

    Chromosome A01 - NC_024795.2Genomic Context describing neighboring genes Neighboring gene myosin-binding protein 7 Neighboring gene transfer RNA arginine (anticodon CCU) Neighboring gene T-complex protein 1 subunit eta Neighboring gene putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 Neighboring gene protein RISC-INTERACTING CLEARING 3'-5' EXORIBONUCLEASE 1 Neighboring gene uncharacterized LOC103845990

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase PUB24

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAAS_Brap_v3.01 Primary Assembly

    Genomic

    1. NC_024795.2 Reference CAAS_Brap_v3.01 Primary Assembly

      Range
      26506282..26510076
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009122878.2 → XP_009121126.1  E3 ubiquitin-protein ligase PUB24

      UniProtKB/TrEMBL
      A0A398ASQ8, M4FC67
      Conserved Domains (1) summary
      smart00504
      Location:13 → 76
      Ubox; Modified RING finger domain
    Nucleotide Protein
    Heading Accession and Version

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