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    LOC103638522 DEAD-box ATP-dependent RNA helicase 31 [ Zea mays ]

    Gene ID: 103638522, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC103638522
    Gene description
    DEAD-box ATP-dependent RNA helicase 31
    Locus tag
    ZEAMMB73_Zm00001d046097
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    GRMZM2G041732
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    Genomic context

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    Location:
    chromosome: 9
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 9 NC_050104.1 (65328106..65347866, complement)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 9 NC_024467.2 (63160730..63180465, complement)

    Chromosome 9 - NC_050104.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109942537 Neighboring gene tubby-like F-box protein 11 Neighboring gene transcription factor SPEECHLESS Neighboring gene uncharacterized LOC109942440 Neighboring gene uncharacterized LOC103638520

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DEAD-box ATP-dependent RNA helicase 31
    Names
    putative DEAD-box ATP-dependent RNA helicase family protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050104.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      65328106..65347866 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008661416.3 → XP_008659638.1  DEAD-box ATP-dependent RNA helicase 31

      See identical proteins and their annotated locations for XP_008659638.1

      UniProtKB/TrEMBL
      A0A1D6P0V9, A0A804UJB9
      Conserved Domains (3) summary
      PRK11192
      Location:458 → 864
      PRK11192; ATP-dependent RNA helicase SrmB; Provisional
      cd00079
      Location:695 → 817
      HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
      cd00268
      Location:458 → 670
      DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...

    RNA

    1. XR_558851.3 RNA Sequence

    2. XR_004852660.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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