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    LOC100191763 AP-3 complex subunit sigma-2 [ Zea mays ]

    Gene ID: 100191763, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC100191763
    Gene description
    AP-3 complex subunit sigma-2
    Locus tag
    ZEAMMB73_Zm00001d047992
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    GRMZM2G177914
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    Genomic context

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    See LOC100191763 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 9 NC_050104.1 (150817574..150820660)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 9 NC_024467.2 (147411374..147414452)

    Chromosome 9 - NC_050104.1Genomic Context describing neighboring genes Neighboring gene Erythronate-4-phosphate dehydrogenase family protein Neighboring gene probable receptor-like serine/threonine-protein kinase At4g34500 Neighboring gene putative inactive poly [ADP-ribose] polymerase SRO1 Neighboring gene inositol-tetrakisphosphate 1-kinase 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SNP discovery via 454 transcriptome sequencing. Barbazuk WB, et al. Plant J, 2007 Sep. PMID 17662031, Free PMC Article
    2. Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing. Vega-Arreguín JC, et al. BMC Genomics, 2009 Jul 6. PMID 19580677, Free PMC Article
    3. Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization. Gardiner J, et al. Plant Physiol, 2004 Apr. PMID 15020742, Free PMC Article
    4. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
    5. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of membrane coat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AP-3 complex subunit sigma-2
    Names
    AP-3 complex subunit sigma

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001137188.2 → NP_001130660.1  AP-3 complex subunit sigma-2

      See identical proteins and their annotated locations for NP_001130660.1

      Status: VALIDATED

      Source sequence(s)
      BQ048237, CF626280, EE189165, EG090735, FK972985
      UniProtKB/TrEMBL
      A0A1D6PFK8, A0A3L6DDA6, B4FA26
      Conserved Domains (1) summary
      COG5030
      Location:1 → 152
      APS2; Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion]

    RNA

    1. NR_183638.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BQ048237, CF626280, EB637673, EE189165, EG090735, FK972985

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050104.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      150817574..150820660
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008659803.3 → XP_008658025.1  AP-3 complex subunit sigma-2 isoform X1

      UniProtKB/TrEMBL
      A0A1D6PFK8, A0A3L6DDA6, A0A804R9A9
      Conserved Domains (2) summary
      COG0840
      Location:107 → 168
      Tar; Methyl-accepting chemotaxis protein [Cell motility, Signal transduction mechanisms]
      COG5030
      Location:1 → 156
      APS2; Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion]

    RNA

    1. XR_558171.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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