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    LOC100384098 uncharacterized LOC100384098 [ Zea mays ]

    Gene ID: 100384098, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC100384098
    Gene description
    uncharacterized LOC100384098
    Locus tag
    ZEAMMB73_Zm00001d051527
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    GRMZM2G070865
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    Genomic context

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    See LOC100384098 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 4 NC_050099.1 (163293981..163299221)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 4 NC_024462.2 (161520023..161525259)

    Chromosome 4 - NC_050099.1Genomic Context describing neighboring genes Neighboring gene probable xyloglucan endotransglucosylase/hydrolase protein 30 Neighboring gene probable xyloglucan endotransglucosylase/hydrolase protein 30 Neighboring gene uncharacterized LOC100278739 Neighboring gene uncharacterized LOC100194028

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing. Vega-Arreguín JC, et al. BMC Genomics, 2009 Jul 6. PMID 19580677, Free PMC Article
    2. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription cis-regulatory region binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in abaxial cell fate specification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Probable transcription factor KAN2-like; uncharacterized protein LOC100384098
    Names
    putative MYB DNA-binding domain superfamily protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001176690.2 → NP_001170161.1  Probable transcription factor KAN2-like isoform 2

      See identical proteins and their annotated locations for NP_001170161.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) has the long third exon.
      Source sequence(s)
      BT069143, EZ089692
      UniProtKB/TrEMBL
      C0PLH4
      Conserved Domains (1) summary
      TIGR01557
      Location:170 → 225
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class

    2. NM_001321767.1 → NP_001308696.1  Probable transcription factor KAN2-like isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) has the short third exon.
      Source sequence(s)
      BT069143, EE177755, EY254320
      UniProtKB/TrEMBL
      A0A3L6EXP5, A0A804NUT0
      Conserved Domains (1) summary
      TIGR01557
      Location:170 → 225
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050099.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      163293981..163299221
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008679447.3 → XP_008677669.1  uncharacterized protein LOC100384098 isoform X3

      UniProtKB/TrEMBL
      A0A3L6EXP5
      Conserved Domains (1) summary
      TIGR01557
      Location:170 → 225
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class

    2. XM_035967068.1 → XP_035822961.1  uncharacterized protein LOC100384098 isoform X4

      UniProtKB/TrEMBL
      A0A3L6EXP5, A0A804NUT1
      Conserved Domains (1) summary
      TIGR01557
      Location:170 → 225
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class

    3. XM_008679446.3 → XP_008677668.1  uncharacterized protein LOC100384098 isoform X2

      UniProtKB/TrEMBL
      A0A804NUS8
      Conserved Domains (1) summary
      TIGR01557
      Location:170 → 219
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class

    4. XM_008679444.3 → XP_008677666.1  uncharacterized protein LOC100384098 isoform X1

      UniProtKB/TrEMBL
      A0A1D6Q7L2, A0A3L6EXP5
      Conserved Domains (1) summary
      TIGR01557
      Location:170 → 225
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    Nucleotide Protein
    Heading Accession and Version

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