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    LOC100383369 uncharacterized LOC100383369 [ Zea mays ]

    Gene ID: 100383369, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC100383369
    Gene description
    uncharacterized LOC100383369
    Locus tag
    ZEAMMB73_Zm00001d051749
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    HB115; pco078109; GRMZM2G021339
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    Genomic context

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    See LOC100383369 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 4 NC_050099.1 (170911521..170913689)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 4 NC_024462.2 (168775942..168778162)

    Chromosome 4 - NC_050099.1Genomic Context describing neighboring genes Neighboring gene Ribosomal protein L14p/L23e pseudogene Neighboring gene calcium sensing receptor Neighboring gene uncharacterized LOC103655671 Neighboring gene E3 ubiquitin ligase BIG BROTHER-related

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization. Gardiner J, et al. Plant Physiol, 2004 Apr. PMID 15020742, Free PMC Article
    2. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Homeobox-leucine zipper protein HOX16; uncharacterized protein LOC100383369
    Names
    HB transcription factor
    putative homeobox DNA-binding and leucine zipper domain family protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001176025.1 → NP_001169496.1  Homeobox-leucine zipper protein HOX16

      See identical proteins and their annotated locations for NP_001169496.1

      Status: PROVISIONAL

      Source sequence(s)
      BT067017
      UniProtKB/TrEMBL
      A0A3L6F711, C0PFE8, K7U8D5
      Conserved Domains (2) summary
      smart00389
      Location:72 → 127
      HOX; Homeodomain
      pfam02183
      Location:129 → 170
      HALZ; Homeobox associated leucine zipper

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050099.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      170911521..170913689
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008679379.4 → XP_008677601.1  uncharacterized protein LOC100383369 isoform X1

      See identical proteins and their annotated locations for XP_008677601.1

      UniProtKB/TrEMBL
      A0A3L6F711, A0A804NVP2, K7U8D5
      Conserved Domains (2) summary
      smart00389
      Location:32 → 87
      HOX; Homeodomain
      pfam02183
      Location:89 → 130
      HALZ; Homeobox associated leucine zipper
    Nucleotide Protein
    Heading Accession and Version

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