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    LOC103647653 organic cation/carnitine transporter 7 [ Zea mays ]

    Gene ID: 103647653, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC103647653
    Gene description
    organic cation/carnitine transporter 7
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    GRMZM2G081774
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    Genomic context

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    See LOC103647653 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 2 NC_050097.1 (205057346..205061431)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 2 NC_024460.2 (204939347..204943419)

    Chromosome 2 - NC_050097.1Genomic Context describing neighboring genes Neighboring gene sequence-specific DNA binding transcription factor Neighboring gene uncharacterized LOC100303824 Neighboring gene uncharacterized LOC100381414 Neighboring gene transfer RNA glutamic acid (anticodon CUC)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    organic cation/carnitine transporter 7

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050097.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      205057346..205061431
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008672154.3 → XP_008670376.2  organic cation/carnitine transporter 7 isoform X1

      UniProtKB/TrEMBL
      A0A1D6EVD0
      Conserved Domains (1) summary
      cl26863
      Location:42 → 524
      Sugar_tr; Sugar (and other) transporter

    2. XM_008672155.4 → XP_008670377.1  organic cation/carnitine transporter 7 isoform X2

      See identical proteins and their annotated locations for XP_008670377.1

      UniProtKB/TrEMBL
      A0A1D6EVD0, A0A804MQP0
      Conserved Domains (2) summary
      cd06174
      Location:35 → 477
      MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
      TIGR00895
      Location:22 → 446
      2A0115; benzoate transport
    Nucleotide Protein
    Heading Accession and Version

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