U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    LOC103639469 pentatricopeptide repeat-containing protein, chloroplastic-like [ Zea mays ]

    Gene ID: 103639469, updated on 14-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC103639469
    Gene description
    pentatricopeptide repeat-containing protein, chloroplastic-like
    Locus tag
    ZEAMMB73_Zm00001d030624
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    GRMZM2G432850
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC103639469 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 1 NC_050096.1 (151402113..151406348)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 1 NC_024459.2 (149517779..149521995)

    Chromosome 1 - NC_050096.1Genomic Context describing neighboring genes Neighboring gene Solute carrier family 40 member 3 chloroplastic Neighboring gene uncharacterized LOC118476060 Neighboring gene protein kinase domain superfamily protein Neighboring gene uncharacterized LOC118473072

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article
    2. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    pentatricopeptide repeat-containing protein At2g31400, chloroplastic
    Names
    genomes uncoupled1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050096.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      151402113..151406348
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008662223.4 → XP_008660445.1  pentatricopeptide repeat-containing protein At2g31400, chloroplastic

      See identical proteins and their annotated locations for XP_008660445.1

      UniProtKB/TrEMBL
      A0A1D6KD91, A0A317YBC3, A0A317YDV4
      Conserved Domains (4) summary
      smart00463
      Location:745 → 827
      SMR; Small MutS-related domain
      sd00004
      Location:387 → 414
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:558 → 652
      PPR_2; PPR repeat family
      cl25449
      Location:250 → 586
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials